The training system of full time master of engineering emphasizes engineering appliaction. Its target is to cultivate the engineering managers who have the application-oriented and mixed capabilities. This paper investigated the problems in low degree of convergence, over-emphasized theory and lacking of practicing resources. And engineering capabilies consist of four dimesions: the engineering accomplishment, engineering practing capabilities, innovation capabilities and entrepreneurship capabilities. The questionnare indicates that the students have better engineering practing capabilities and innovation capabilities. However, the students should improve the engineering accomplishment, and entrepreneurship capabilities. The unversities and firms should together design the improving mechanisms.