As the agency for natural resources reform, reorganization, the original department application systems and data resources must be inherited by a new natural resources, but have different due to different application purpose between government departments and data standard, data redundant construction, multiple, heterogeneous data confusion, lead to the low data reuse, compatibility, to the depth of the data mining analysis has brought certain difficulties, Especially in the field of natural resources, the overall management and analysis across industries has caused certain difficulties. Face under the background of the new situation, the management of natural resources of new tasks and new demands, in this paper, the existing data to classify, analysis the existing problems, put forward from the data frame structures, unified data standard, data application process design perspective to explore the natural resources integration of the data management, then analysis how to in-depth application.